BiOnIC - Catalog of User Interactions with Biomedical Ontologies


We provide aggregate statistics on the total number of clicks and queries for access to each class in 255 BioPortal ontologies, as well as reuse counts and class characteristics in the class statistics datasets. The access requests are extracted from Apache logs between January 2013 to June 2016. We also provide anonymized user sequences of access for each ontology using WebUI or API modes, under the user interaction sequences datasets. The datasets are available as TSV files and RDF HDT formats. To know more about HDT file formats and converting them to standard N-triples or turtle formats, please visit http://rdfhdt.org. You can easily download these files for select ontologies or all ontologies as a Gzipped archive, and load them to a Linked Data Fragments SPARQL server (or any other triplestore after conversion). (Note: Some files may not have been converted to HDT format due to their large size, and are indicated as "0". We will do our best to convert and upload these, but you can use the TSV file and the scripts provided to convert them to N-triples format!)

  
  

Ontology NameTSV File (Size)RDF HDT Dataset (Size)BioPortal Link
  

Ontology NameTSV File (Size)RDF HDT Dataset (Size)BioPortal Link